https://www.cce.pk.edu.pl/~putanowr/dokuwiki/ 2026-06-13T04:59:15+0200 https://www.cce.pk.edu.pl/~putanowr/dokuwiki/ https://www.cce.pk.edu.pl/~putanowr/dokuwiki/lib/tpl/bootstrap3/images/favicon.ico text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:academicsoftware&rev=1506952483&do=diff Software at Academia Green buildings * <http://blog.capterra.com/green-construction-software/> * <http://www.capterra.com/construction-management-software/software-research-with-procore> Quality of academic software * On the quality of academic software <http://lemire.me/blog/2012/06/18/on-the-quality-of-academic-software/> * Why do many talented scientists write horrible software? <http://academia.stackexchange.com/questions/17781/why-do-many-talented-scientists-write-horrible-softw… text/html 2018-06-29T09:36:51+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:ahmr&rev=1530257811&do=diff Adaptive Hierarchical Mesh Refinement Links Software * <https://github.com/walkersw/AHF> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:bashtricks&rev=1506952483&do=diff Bash tricks Starting command in a background Aliases cannot have & added but instead of aliases one can use functions: viL { command gvim $* & disown } text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:bending&rev=1506952483&do=diff back to Octave programming (en) Animated bending transformation For some mesh generation example I needed a “bending transformation”. As a prototype I have written a simple Octave script that generates the animation below. The script used to produce the animation frames can be found here: text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:books&rev=1506952483&do=diff Books This page contains a list of books that caught my attention: <BIBTEX: file=mybooks_bib style=chicago> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:brlcad&rev=1506952483&do=diff BRL-CAD Links * <http://content.gpwiki.org/index.php/BRL-CAD#Geometry_Modeling_Kernel> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:c&rev=1506952483&do=diff * <http://c-faq.com/> * <http://www.literateprogramming.com/ctraps.pdf> * <http://www.amazon.com/C-Traps-Pitfalls-Andrew-Koenig/dp/0201179288> * <http://helion.pl/ksiazki/programowanie_w_jezyku_c_faq_steve_summit,prcfaq.htm> * <http://c2.com/cgi/wiki?CeeLanguage> Error handling * <http://www.xxeo.com/articles/error-handling-error-codes-exceptions-and-beyond> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:ca&rev=1506952483&do=diff Computational Algebra Links * CoCaALib text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:cmake&rev=1506952483&do=diff CMake * Organizing VS projects into folders <http://blog.audio-tk.com/2015/09/01/sorting-source-files-and-projects-in-folders-with-cmake-and-visual-studioxcode/> * Daniel Pfeifer "Effective CMake" text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:convolution&rev=1506952483&do=diff Convolution * <http://www.astro.washington.edu/docs/idl/cgi-bin/getpro/library21.html?CONVOL3D> * <http://www-structmed.cimr.cam.ac.uk/Course/Convolution/convolution.html> * <http://lpsa.swarthmore.edu/Convolution/Convolution2.html> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:cpp&rev=1506952483&do=diff Notes on C++ programming VS linking Linker Tools Warning LNK4098 : <https://msdn.microsoft.com/en-us/library/aa267384>(v=vs.60).aspx <https://msdn.microsoft.com/en-us/library/aa293346>(v=vs.60).aspx <https://stackoverflow.com/questions/3007312/resolving-lnk4098-defaultlib-msvcrt-conflicts-with> <https://blogs.msdn.microsoft.com/vcblog/2013/10/29/the-visual-c-linker-best-practices-developer-iteration/> Implementing iterators * <http://www.cs.northwestern.edu/~riesbeck/programming/c++/stl… text/html 2018-12-09T14:28:34+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:environsetup&rev=1544362114&do=diff Environment setup This page is collection of resources related to environment setup, tools setup, clever configurations, plugins etc. * <http://www.anishathalye.com/2014/08/03/managing-your-dotfiles/> * <https://dotfiles.github.io/> * <https://developer.atlassian.com/blog/2016/02/best-way-to-store-dotfiles-git-bare-repo/> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:femdsl&rev=1506952483&do=diff DSL for FEM Domain Specific Languages for Finite Element Method ---------- This page is an unsorted collectin of links related to the above topic: * FELICITY <http://code.google.com/p/felicity-finite-element-toolbox/> * <http://mosaic.mpi-cbg.de/docs/Awile2013b.pdf> * <http://www.math.chalmers.se/~logg/pub/teaching/geilo-2006/logg-geilo-2006-lecture-1.pdf> * <http://www.mathworks.com/matlabcentral/fileexchange/31141-felicit> * <http://www.cse.scitech.ac.uk/events/GPU_2010/06_Markal… text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:fframe&rev=1506952483&do=diff back to Octave programming (en) Frenet Frame Links * [Quaternion Frenet Frames: Making Optimal Tubes and Ribbons from Curves], 2007, Indiana University Technical Report Sample programs fframe -- Frenet frame in Octave Plotting of Frenet frame for curve lofted through three points. Here is [Octave script] used to produce the picture below (the figure was saved in FIG format and edited in xfig to correct line thickness before exporting to PNG). text/html 2019-07-23T09:10:28+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:hdf5&rev=1563865828&do=diff HDF5 Links * <https://github.com/scopatz/hdf5-is-for-lovers> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:hdf5api&rev=1506952483&do=diff back Setting HDF5 API version Recently (April 2014) I have encountered problems in compiling applications with HDF5 library. Sample error messages are here: Hdf5IO.cpp:25:110: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’ *dataset_id = H5Dcreate(*file_id, name, H5T_NATIVE_INT, *dataspace_id,H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); text/html 2019-11-04T14:37:20+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:how_to_learn&rev=1572874640&do=diff How to learn * <https://www.youtube.com/watch?v=IlU-zDU6aQ0> text/html 2018-04-17T09:47:41+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:iga&rev=1523951261&do=diff IGA notes Links IGA preprocessing * Rhino->MATLAB->IGA * Generating analysis-ready NURBS models of cloth for isogeometric analysis * GID as IGA preprocessor text/html 2019-08-03T11:00:17+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:images&rev=1564822817&do=diff Images manipulation Kira * <https://krita.org/en/> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:js&rev=1506952483&do=diff JavaScript programming Links * A Yeoman generator for Aria Templates text/html 2018-03-22T01:17:25+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:libraries&rev=1521677845&do=diff C/C++ libraries This page contains links to C/C++ libraries I came across: * vigra * UDUNITS -- units conversion utilities * <http://calumgrant.net/units/units.html> * PDF generation libraries: * <http://www.jagpdf.org/> * <http://podofo.sourceforge.net/> * <http://libharu.org/wiki/Main_Page> * Minimal Perfect Hashing library : <http://cmph.sourceforge.net/> * Libraries to support processing of BibTeX records: text/html 2018-09-15T08:41:07+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:materials&rev=1536993667&do=diff Materials modeling General articles * Open Source Software for Material Modeling <http://www.tms.org/pubs/journals/jom/0805/powell-0805.html> Materials modeling libraries * Materials Algirithms Project : <http://www.jwri.osaka-u.ac.jp/map/backg.html> * GooseMaterial : <https://github.com/tdegeus/GooseMaterial> * muesli : <https://materials.imdea.org/research/simulation-tools/muesli/> * Feel++ <http://docs.feelpp.org/docs/stable/> * Porous materials * Dune * DuMux * The… text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:mathtools&rev=1506952483&do=diff Mathematical Tools This page is rather chaotic set of links to resources in topics that recently fascinate me: algebra, topology, geometric algebra, differential geometry and alike Algebraic topology * <http://www.mimuw.edu.pl/~sjack/ta/ta_1_1011.html> -- course materials for “Topologia algebraiczna text/html 2018-11-20T11:13:27+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:matlab&rev=1542708807&do=diff Notes on Matlab programming Examples * Projectile motion trajectory * Annotated source code * All files On-line resources Webinars * <http://www.ont.com.pl/webinaria/tworzenie-gui-za-pomoca-matlab-app-designer/> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:maxima&rev=1506952483&do=diff Maxima Links * <http://michel.gosse.free.fr/documentation/fichiers/maximabook.pdf> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:meshadaptation&rev=1506952483&do=diff Mesh adaptation Splitting regular mesh text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:misctips&rev=1506952483&do=diff Back Miscellaneous tips # CVS 1) Importing directory cd e_lib cvs import -m "Import of SECT E-Lib" e_lib SECT-E-LIB E-LIB-1-0 2) Creating module cvs checkout CVSROOT/modules cd CVSROOT edit the file modules and add the lines: e_lib e_lib cvs commit -m "Added the e_lib module." modules cd .. cvs release -d CVSROOT #1 gcc options bounds checking : gcc -g -fbounds-checking #2 tool for geting POP-3 emails : fetchpop #3 Nice desktop colors: green backgro… text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:mms&rev=1506952483&do=diff Notes on Method of Manufactured Solutions Links * <http://www.innovative-cfd.com/manufactured-solutions.html> * <http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=JFEGA4000124000001000004000001&idtype=cvips&gifs=yes&ref=noxample.com> * <http://imechanica.org/node/1357> text/html 2019-03-15T14:44:41+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:octave&rev=1552657481&do=diff back Octave programming Examples * Animated bending transformation * Frenet frame * Building seven diagonal symmetric matrix * Finite Difference Method (FDM) for Poisson Equation * Application with a GUI text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:ode&rev=1506952483&do=diff Oridary differential equations * <http://www.unige.ch/~hairer/software.html> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:pdftricks&rev=1506952483&do=diff back PDF tricks This page list some hints related to processing of PDF files. Counting pages in multiple PDF documents. This one-liner does the trick using pdfinfo tool: for i in *.pdf; do pdfinfo $i | grep Pages ; do To display file names along number of pages use this command: text/html 2019-07-30T08:16:05+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:programming&rev=1564467365&do=diff General programming tpis Naming * <http://journal.stuffwithstuff.com/2016/06/16/long-names-are-long/> text/html 2019-09-30T09:27:05+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:pycharms&rev=1569828425&do=diff PyCharm Links * <https://github.com/sigo/jetbrains-polish-dictionary> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:qt&rev=1506952483&do=diff Qt programming Creating a SVG based image for QTextDocument What I needed was a way to create an image from SVG raw data generated in the fly. Here is possible solution: <sxh c++> QTextCursor mainCursor; // Should be initialised somehow QString figData( "<svg xmlns=\"http://www.w3.org/2000/svg\" version=\"1.1\"> " "<circle cx=\"100\" cy=\"50\" r=\"40\" stroke=\"black\" " "stroke-width=\"2\" fill=\"red\"/> " "</svg>"); QXmlStreamReader figReader(figData); QSvgRenderer renderer; boo… text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:questions&rev=1506952483&do=diff Questions * Scaffolding Python application How to quickly generate fairly standard and complete CLI and GUI application in Python? I need a scafolding tool even for my throw-away applications as they usually turn out not to be the "throw-away" :) Tue May 19 11:25:07 CEST 2015 text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:quotes&rev=1506952483&do=diff Quotes * “Truth is much too complicated to allow anything but approximations.” John von Neumann text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:sdms&rev=1506952483&do=diff Scientific Data Management Systems * <http://www.limswiki.org/index.php?title=Scientific_data_management_system> * <http://web.archive.org/web/20110829224644/https://sdm.lbl.gov/sdmcenter/> * <https://issdm.soe.ucsc.edu/> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:sevendiag&rev=1506952483&do=diff back Building seven diagonal symmetric matrix This kind of matrix appears when assembling stiffness matrix for a beam using standard 2D beam element. [The script] below builds and solves a system with seven diagonal symmetric matrix d = [10, 21, 12, 33, 14, -15 ] e = [2, 1.1 5.2 2.3 -2.4] f = [1.0 3.1 1.2 2.3] g = [0.1 -0.2 1.3] b= transpose([1.0 2.1 1.2 4.3 1.4 6.5]) A = diag(d) + diag(e,1) + diag(e,-1) + diag(f,2) + diag(f,-2) + diag(g,3) + diag(g,-3) A\b text/html 2018-11-16T00:37:03+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:sphinxtricks&rev=1542325023&do=diff Documenting with Sphinx Tips Structural elements # with overline, for parts * with overline, for chapters =, for sections -, for subsections ^, for subsubsections ", for paragraphs text/html 2022-04-18T10:56:21+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:start&rev=1650272181&do=diff Research notebook The purpose of this page is to be a sort of research notebook. I have also created a project at OSF (Open Science Frameworks) site having similar purpose in mind (and to investigate the facilities provided by OSF). Project page Computational Engineering Notebook Questions text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:tex&rev=1506952483&do=diff TeX and LaTeX Links * TeX cookbook <http://www.math.uconn.edu/ITResources/Downloads/TeXCookbook.pdf> * Texcaller -- simple interface to LaTeX from C/C++/shell/etc <http://vog.github.io/texcaller/index.html> text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:unicode&rev=1506952483&do=diff Writing with Unicode Recently I adjusted my environment to use utf8 encoding. One of the motivation for this was to use Unicode math symbols while writing text files. I am using vim/gvim as editor and for a moment the solution for me to enter Unicode characters are abbreviations in insert mode (the tag are set to minimize the risk of collision with ordinary words or variable/function names). text/html 2017-10-02T15:54:43+0200 Anonymous (anonymous@undisclosed.example.com) https://www.cce.pk.edu.pl/~putanowr/dokuwiki/doku.php?id=en:research:notebook:wininstal&rev=1506952483&do=diff Installers on Windows Innosetup